Fractionated irradiation of MCF7 breast cancer cells rewires a gene regulatory circuit towards a treatment resistant stemness phenotype
Inalegwu, Auchi; Cuypers, Bart; Claesen, Jürgen; Janssen, Ann; Coolkens, Amelie; Baatout, Sarah; Laukens, Kris , De Vos, Winnok; Quintens, Roel
Molecular Oncology - ISSN 1574-7891 - 16(2022), p.3410-3435
The effect of local non-thermal plasma therapy on the cancer-immunity cycle in a melanoma mouse model
Lin, Abraham; De Backer, Joey; Quatannens, Delphine; Cuypers, Bart; Verswyvel, Hanne; Cardenas, Edgar; Ribbens, Bart; Siozopoulou,
Vasiliki; van Audenaerde, Jonas; Marcq, Elly; Lardon, Filip; Laukens, Kris , Vanlanduit, Steve; Smits, Evelien; Bogaerts, Annemie
Bioengineering & Translational Medicine - ISSN 2380-6761 - 7(2022), p.1-18
Viral evolution and immunology of SARS-CoV-2 in a persistent infection after treatment with rituximab
Van der Moeren, Nathalie; Selhorst, Philippe; Ha, My; Heireman, Laura; Van Gaal, Pieter-Jan; Breems, Dimitri; Meysman, Pieter; Laukens, Kris , Verstrepen, Walter; Van Gasse, Natasja; Ogunjimi, Benson; Ariën, Kevin; Naesens, Reinout
Viruses - ISSN 1999-4915 - 14(2022), p.1-11
A treatment recommender clinical decision support system for personalized medicine : method development and proof-ofconcept for drug resistant tuberculosis
Verboven, Lennert; Calders, Toon; Callens, Steven; Black, John; Maartens, Gary; Dooley, Kelly E.; Potgieter, Samantha; Warren, Robin M.; Laukens, Kris , Van Rie, Annelies
BMC medical informatics and decision making - ISSN 1472-6947 - 22(2022), p. -
Preexisting memory CD4 T cells in naïve individuals confer robust immunity upon hepatitis B vaccination
Elias, George; Meysman, Pieter; Bartholomeus, Esther; De Neuter, Nicolas; Keersmaekers, Nina; Suls, Arvid; Jansens, Hilde; Souquette, Aisha; De Reu, Hans; Emonds, Marie-Paule; Smits, Evelien; Lion, Eva; Thomas, Paul G.; Mortier, Geert; van Damme, Pierre; Beutels, Philippe; Laukens, Kris , Van Tendeloo, Vigor; Ogunjimi, Benson
eLife - ISSN 2050-084X - 11(2022), p. -
MoMAC : multi-objective optimization to combine multiple association rules into an interpretable classification
Bui Thi, Danh; Meysman, Pieter; Laukens, Kris
Applied intelligence - ISSN 0924-669X - 52(2022), p.3090-3102
Nanopore sequencing for Mycobacterium tuberculosis : a critical review of the literature, new developments and future opportunities
Dippenaar, Anzaan; Goossens, Sander; Grobbelaar, Melanie; Oostvogels, Selien; Cuypers, Bart; Laukens, Kris , Meehan, Conor J.;Warren, Robin M.; Van Rie, Annelies
Journal of clinical microbiology - ISSN 0095-1137 - 60(2022), p. -
Proteomic assessment of C57BL/6 hippocampi after non-selective pharmacological inhibition of nitric oxide synthase activity : implications of seizure-like neuronal hyperexcitability followed by tauopathy
Hendrickx, Jhana; Adams, Charlotte; Sieben, Anne; Laukens, Kris , Van Dam, Debby; De Meyer, Guido
Biomedicines - ISSN 2227-9059 - 10(2022), p.1-18
Activation of interferon-stimulated genes following varicella-zoster virus infection in a human iPSC-derived neuronal in vitro model depends on exogenous interferon-α
Boeren, Marlies; Van Breedam, Elise; Buyle-Huybrecht, Tamariche; Lebrun, Marielle; Meysman, Pieter; Sadzot-Delvaux, Catherine; Van Tendeloo, Vigor; Mortier, Geert; Laukens, Kris , Ogunjimi, Benson; Ponsaerts, Peter; Delputte, Peter
Viruses - ISSN 1999-4915 - 14(2022), p.1-24
Open modification searching of SARS-CoV-2–human protein interaction data reveals novel viral modification sites
Adams, Charlotte; Boonen, Kurt; Laukens, Kris , Bittremieux, Wout
Molecular and cellular proteomics - ISSN 1535-9476 - 21(2022), p.1-12
Blood transcriptomics to facilitate diagnosis and stratification in pediatric rheumatic diseases : a proof of concept study
Ha, My; Bartholomeus, Esther; Van Os, Luc; Dandelooy, Julie; Leysen, Julie; Aerts, Olivier; Siozopoulou, Vasiliki; De Smet, Eline; Gielen, Jan; Guerti, Khadija; De Maeseneer, Michel; Lechkar, Bouchra; Zaqout, Mahmoud; Boiy, Tine; van Damme, Pierre; Jansen, Anna; Meuwissen, Marije; Sabato, Vito; Van Camp, Guy; Suls, Arvid; Laukens, Kris , Meysman, Pieter; Ogunjimi, Benson (laatste auteur), et al.
Pediatric rheumatology - ISSN 1546-0096 - 20(2022), p.1-10
Band 3-mediated Plasmodium vivax invasion is associated with transcriptional variation in PvTRAg genes.
De Meulenaere, Katlijn; Prajapati, Surendra Kumar; Villasis, Elizabeth; Cuypers, Bart; Kattenberg, Johanna Helena; Kasian, Bernadine; Laman, Moses; Robinson, Leanne J.; Gamboa, Dionicia; Laukens, Kris , Rosanas-Urgell, Anna
Frontiers in cellular and infection microbiology - ISSN 2235-2988 - 12(2022), p.1-19
Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania
Cuypers, Bart; Meysman, Pieter; Erb, Ionas; Bittremieux, Wout; Valkenborg, Dirk; Baggerman, Geert; Mertens, Inge; Sundar, Shyam; Khanal, Basudha; Notredame, Cedric; Dujardin, Jean-Claude; Domagalska, Malgorzata; Laukens, Kris
PLoS pathogens - ISSN 1553-7366 - 18(2022), p.1-23
Variants in bedaquiline-candidate-resistance genes : prevalence in bedaquiline-naive patients, effect on MIC, and association with Mycobacterium tuberculosis lineage
Rivière, Emmanuel; Verboven, Lennert; Dippenaar, Anzaan; Goossens, Sander; De Vos, Elise; Streicher, Elizabeth; Cuypers, Bart; Laukens, Kris , Ben-Rached, Fathia; Rodwell, Timothy C.; Pain, Arnab; Warren, Robin M.; Heupink, Tim; Van Rie, Annelies
Antimicrobial agents and chemotherapy - ISSN 0066-4804 - 66(2022), p.1-12
Predicting compound-protein interaction using hierarchical graph convolutional networks
Bui Thi, Danh; Rivière, Emmanuel; Meysman, Pieter; Laukens, Kris
PLoS ONE - ISSN 1932-6203 - 17(2022), p.1-19