Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification
Moris, Pieter; De Pauw, Joey; Postovskaya, Anna; Gielis, Sofie; De Neuter, Nicolas; Bittremieux, Wout; Ogunjimi, Benson; Laukens, Kris , Meysman, Pieter
Briefings in bioinformatics - ISSN 1467-5463 - 22(2021), p. -
Sorted B cell transcriptomes point towards actively regulated B cell responses during ongoing chronic hepatitis B infections
Van Hees, Stijn; Cuypers, Bart; Bourgeois, Stefan; Groothuismink, Zwier M.A.; Meysman, Pieter; Van der Vlies, Pieter; de Knegt, Rob; Vonghia, Luisa; Michielsen, Peter; Francque, Sven; Laukens, Kris , Boonstra, Andre; Vanwolleghem, Thomas
Cellular immunology - ISSN 0008-8749 - 362(2021), p. -
Characterization of acquired nutlin-3 resistant non-small cell lung cancer cells
Deben, Christophe; Freire Boullosa, Laurie; Domen, Andreas; Wouters, An; Cuypers, Bart; Laukens, Kris , Lardon, Filip; Pauwels, Patrick
Cancer drug resistance - ISSN 2578-532X - 4(2021), p.233-243
CONSTANd : an efficient normalization method for relative quantification in small- and large-scale omics experiments in R BioConductor and Python
Van Houtven, Joris; Hooyberghs, Jef; Laukens, Kris , Valkenborg, Dirk
Journal of proteome research - ISSN 1535-3893 - 20(2021), p.2151-2156
Open science resources for the mass spectrometry-based analysis of SARS-CoV-2
Bittremieux, Wout; Adams, Charlotte; Laukens, Kris , Dorrestein, Pieter C.; Bandeira, Nuno
Journal of proteome research - ISSN 1535-3893 - 20(2021), p.1464-1475
HLA-DRB1 alleles associated with lower leishmaniasis susceptibility share common amino acid polymorphisms and epitope binding repertoires
de Vrij, Nicky; Meysman, Pieter; Gielis, Sofie; Adriaensen, Wim; Laukens, Kris , Cuypers, Bart
Vaccines - ISSN 2076-393X - 9(2021), p. -
Constrained standardization of count data from massive parallel sequencing
Van Houtven, Joris; Cuypers, Bart; Meysman, Pieter; Hooyberghs, Jef; Laukens, Kris , Valkenborg, Dirk
Journal of molecular biology - ISSN 0022-2836 - 433(2021), p. -
Covalent cysteine targeting of Bruton’s tyrosine kinase (BTK) family by withaferin-A reduces survival of glucocorticoidresistant multiple myeloma MM1 cells
Logie, Emilie; Chirumamilla, Chandra Sekhar; Perez Novo, Claudina; Shaw, Priyanka; Declerck, Ken; Palagani, Ajay; Rangarajan, Savithri;nCuypers, Bart; De Neuter, Nicolas; Mobashar Hussain Urf Turabe, Fazil; Kumar Verma, Navin; Bogaerts, Annemie; Laukens, Kris , Offner, Fritz; Van Vlierberghe, Pieter; van Ostade, Xaveer; Vanden Berghe, Wim
Cancers - ISSN 2072-6694 - 13(2021), p. -
Auranofin reveals therapeutic anticancer potential by triggering distinct molecular cell death mechanisms and innate immunity in mutant p53 non-small cell lung cancer
Freire Boullosa, Laurie; Van Loenhout, Jinthe; Flieswasser, Tal; De Waele, Jorrit; Hermans, Christophe; Lambrechts, Hilde; Cuypers, Bart; Laukens, Kris , Bartholomeus, Esther; Siozopoulou, Vasiliki; De Vos, Winnok; Peeters, Marc; Smits, Evelien; Deben, Christophe
Redox Biology - ISSN 2213-2317 - 42(2021), p. -
Current and future deep learning algorithms for MS/MS based small molecule structure elucidation
Liu, Youzhong; de Vijlder, Thomas; Bittremieux, Wout; Laukens, Kris , Heyndrickx, Wouter
Rapid communications in mass spectrometry - ISSN 0951-4198 - (2021), p.1-29
ClusTCR : a Python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity
Valkiers, Sebastiaan; Van Houcke, Max; Laukens, Kris , Meysman, Pieter
Bioinformatics - ISSN 1367-4803 - 37(2021), p.4865-4867
Large scale tandem mass spectrum clustering using fast nearest neighbor searching
Bittremieux, Wout; Laukens, Kris , Noble, William Stafford; Dorrestein, Pieter C.
Rapid communications in mass spectrometry - ISSN 0951-4198 - (2021), p.1-20
A targeted multi-omics approach reveals paraoxonase-1 as a determinant of obesity-associated fatty liver disease
Diels, Sara; Cuypers, Bart; Tvarijonaviciute, Asta; Derudas, Bruno; Van Dijck, Evelien; Verrijken, An; Van Gaal, Luc; Laukens, Kris , Lefebvre, Philippe; Ceron, Jose J.; Francque, Sven; Vanden Berghe, Wim; Van Hul, Wim
Clinical epigenetics - ISSN 1868-7075 - 13(2021), p. -
Ferroptosis induction in multiple myeloma cells triggers DNA methylation and histone modification changes associated with cellular senescence
Logie, Emilie; Van Puyvelde, Bart; Cuypers, Bart; Schepers, Anne; Berghmans, Herald; Verdonck, Jelle; Laukens, Kris , Godderis, Lode; Dhaenens, Maarten; Deforce, Dieter; Vanden Berghe, Wim
International journal of molecular sciences - ISSN 1422-0067 - 22(2021), p.1-25