IL-22-activated MUC13 impacts on colonic barrier function through JAK1/STAT3, SNAI1/ZEB1 and ROCK2/MAPK signaling
Breugelmans, Tom; Arras, Wout; Oosterlinck, Baptiste; Jauregui, Aranzazu; Somers, Michaël; Cuypers, Bart; Laukens, Kris , de Man, Joris; de Schepper, Heiko; De Winter, Benedicte; Smet, Annemieke
Cells - ISSN 2073-4409 - 12(2023), p.1-25
MeRgeION : a multifunctional R pipeline for small molecule LC-MS/MS data processing, searching, and organizing
Liu, Youzhong; Zhang, Yingjie; Vennekens, Tom; Lippens, Jennifer L.; Duijsens, Luc; Bui Thi, Danh; Laukens, Kris , de Vijlder, Thomas
Analytical chemistry - ISSN 0003-2700 - 95(2023), p.8433-8442
Semisupervised machine learning for sensitive open modification spectral library searching
Arab, Issar; Fondrie, William Ee; Laukens, Kris , Bittremieux, Wout
Journal of proteome research - ISSN 1535-3893 - 22(2023), p.585-593
Acquired non-thermal plasma resistance mediates a shift towards aerobic glycolysis and ferroptotic cell death in melanoma
Lin, Abraham; Sahun, Maxime; Biscop, Eline; Verswyvel, Hanne; De Waele, Jorrit; De Backer, Joey; Theys, Claudia; Cuypers, Bart; Laukens, Kris , Vanden Berghe, Wim; Smits, Evelien; Bogaerts, Annemie
Drug resistance updates - ISSN 1368-7646 - 67(2023), p.1-16
T cell immunity in HSV-1- and VZV-infected neural ganglia
Boeren, Marlies; Meysman, Pieter; Laukens, Kris , Ponsaerts, Peter; Ogunjimi, Benson; Delputte, Peter
Trends in microbiology - ISSN 0966-842X - 31(2023), p.51-61
Leveraging T-cell receptor – epitope recognition models to disentangle unique and cross-reactive T-cell response to SARSCoV-2 during COVID-19 progression/resolution
Postovskaya, Anna; Vujkovic, Alexandra; de Block, Tessa; van Petersen, Lida; van Frankenhuijsen, Maartje; Brosius, Isabel; Bottieau, Emmanuel; Van Dijck, Christophe; Theunissen, Caroline; Van Ierssel, Sabrina; Vlieghe, Erika; Bartholomeus, Esther; Mullan, Kerry; Adriaensen, Wim; Vanham, Guido; Ogunjimi, Benson; Laukens, Kris , Vercauteren, Koen; Meysman, Pieter
Frontiers in immunology - ISSN 1664-3224 - 14(2023), p.1-14
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia
Cuypers, Wim; Meysman, Pieter; Weill, François-Xavier; Hendriksen, Rene S.; Beyene, Getenet; Wain, John; Nair, Satheesh; Chattaway, Marie A.; Perez-Sepulveda, Blanca M.; Ceyssens, Pieter-Jan; de Block, Tessa; Lee, Winnie W.Y.; Pardos de la Gandara, Maria; Kornschober, Christian; Moran-Gilad, Jacob; Veldman, Kees T.; Cormican, Martin; Torpdahl, Mia; Fields, Patricia I.; Černý, Tomáš; Hardy, Liselotte; Tack, Bieke; Mellor, Kate C.; Thomson, Nicholas; Dougan, Gordon; Deborggraeve, Stijn; Jacobs, Jan; Laukens, Kris , Van Puyvelde, Sandra
Nature communications - ISSN 2041-1723 - 14(2023), p.1-12
Multi-view learning to unravel the different levels underlying hepatitis B vaccine response
Affaticati, Fabio; Bartholomeus, Esther; Mullan, Kerry; van Damme, Pierre; Beutels, Philippe; Ogunjimi, Benson; Laukens, Kris , Meysman, Pieter
Vaccines - ISSN 2076-393X - 11(2023), p.1-19
Lack of strong innate immune reactivity renders macrophages alone unable to control productive Varicella-Zoster Virus infection in an isogenic human iPSC-derived neuronal co-culture model
Van Breedam, Elise; Buyle-Huybrecht, Tamariche; Govaerts, Jonas; Meysman, Pieter; Bours, Andrea; Boeren, Marlies; Di Stefano, Julia; Caers, Thalissa; De Reu, Hans; Dirkx, Laura; Schippers, Jolien; Bartholomeus, Esther; Lebrun, Marielle; Sadzot-Delvaux, Catherine; Rybakowska, Paulina; Alarcón-Riquelme, Marta E.; Marañón, Concepción; Laukens, Kris , Delputte, Peter; Ogunjimi, Benson; Ponsaerts, Peter
Frontiers in immunology - ISSN 1664-3224 - 14(2023), p.1-18
A new Plasmodium vivax reference genome for South American isolates
De Meulenaere Katlijn, Cuypers Bart, Gamboa Dionicia, Laukens Kris, Rosanas-Urgell Anna
BMC genomics - ISSN 1471-2164 - 24:1(2023), 606
Benchmarking of small molecule feature representations for hERG, Nav1.5, and Cav1.2 cardiotoxicity prediction
Arab Issar, Egghe Kristof, Laukens Kris, Chen Ke, Barakat Khaled, Bittremieux Wout
Journal of Chemical Information and Modeling - ISSN 1549-960X - (2023), p. 1-13
Kynurenine pathway abnormalities are state-specific but not diagnosis-specific in schizophrenia and bipolar disorder
Skorobogatov Katrien, Autier Valérie, Foiselle Marianne, Richard Jean-Romain, Boukouaci Wahid, Wu Ching-Lien, Raynal Sophie, Carbonne Christel, Laukens Kris, Meysman Pieter, Coppens Violette, le Corvoisier Philippe, Barau Caroline, De Picker Livia, Morrens Manuel, Tamouza Ryad, Leboyer Marion
Brain, behavior, & immunity : health - ISSN 2666-3546 - 27(2023), 100584
Machine learning‐based peptide‐spectrum match rescoring opens up the immunopeptidome
Adams Charlotte, Laukens Kris, Bittremieux Wout, Boonen Kurt
Proteomics - ISSN 1615-9861 - (2023), 2300336