Valeriya Malysheva assistant professor

Publications Valeriya Malysheva

Genetic coupling of enhancer activity and connectivity in gene expression control

Source
Nature communications - ISSN 2041-1723-16:1 (2025) p. 1-26
Author(s)
    Helen Ray-Jones, Chak Kei Sung, Lai Ting Chan, Alexander Haglund, Pavel Artemov, Monica Della Rosa, Luminita Ruje, Frances Burden, Roman Kreuzhuber, Anna Litovskikh, Eline Weyenbergh, Zoi Brusselaers, Vanessa Xue Hui Tan, Mattia Frontini, Chris Wallace, Valeriya Malysheva, Leonardo Bottolo, Elena Vigorito, Mikhail Spivakov

Detecting chromosomal interactions in Capture Hi-C data with CHiCAGO and companion tools

Source
Nature protocols - ISSN 1754-2189-16:9 (2021) p. 4144-4176
Author(s)
    Paula Freire-Pritchett, Helen Ray-Jones, Monica Della Rosa, Chris Q. Eijsbouts, William R. Orchard, Steven W. Wingett, Chris Wallace, Jonathan Cairns, Mikhail Spivakov, Valeriya Malysheva

TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation

Source
Cell - ISSN 0092-8674-184:10 (2021) p. 2618-2632.e17
Author(s)
    Jessica Sook Yuin Ho, Bobo Wing-Yee Mok, Laura Campisi, Tristan Jordan, Soner Yildiz, Sreeja Parameswaran, Joseph A. Wayman, Natasha N. Gaudreault, David A. Meekins, Sabarish Indran, Igor Morozov, Jessie D. Trujillo, Yesai S. Fstkchyan, Raveen Rathnasinghe, Zeyu Zhu, Simin Zheng, Nan Zhao, Kris White, Helen Ray-Jones, Valeriya Malysheva, Michiel J. Thiecke, Siu-Ying Lau, Honglian Liu, Anna Junxia Zhang, Andrew Chak-Yiu Lee, Wen-Chun Liu, Alba Escalera, Teresa Aydillo, Betsaida Salom Melo, Ernesto Guccione, Robert Sebra, Elaine Shum, Jan Bakker, David A. Kaufman, Andre L. Moreira, Mariano Carossino, Udeni B.R. Balasuriya, Minji Byun, Randy A. Albrecht, Michael Schotsaert, Adolfo Garcia-Sastre, Sumit K. Chanda, Emily R. Miraldi, Anand D. Jeyasekharan, Benjamin R. TenOever, Mikhail Spivakov, Matthew T. Weirauch, Sven Heinz, Honglin Chen, Ivan Marazzi

Cohesin-dependent and -independent mechanisms mediate chromosomal contacts between promoters and enhancers

Source
Cell reports - ISSN 2211-1247-32:3 (2020) p.
Author(s)
    Michiel J. Thiecke, Gordana Wutz, Matthias Muhar, Wen Tang, Stephen Bevan, Valeriya Malysheva, Roman Stocsits, Tobias Neumann, Johannes Zuber, Peter Fraser, Stefan Schoenfelder, Jan-Michael Peters, Mikhail Spivakov

A comprehensive resource for retrieving, visualizing, and integrating functional genomics data

Source
Life Science Alliance - ISSN 2575-1077-3:1 (2020) p.
Author(s)
    Matthias Blum, Pierre-Etienne Cholley, Valeriya Malysheva, Samuel Nicaise, Julien Moehlin, Hinrich Gronemeyer, Marco Antonio Mendoza-Parra