mzPeak : designing a scalable, interoperable, and future-ready mass spectrometry data format

Source
Journal of proteome research - ISSN 1535-3893- (2025) p. 1-7
Author(s)
    Tim Van Den Bossche, Theodore Alexandrov, Aivett Bilbao, Wout Bittremieux, Federico Ivan Brigante, Matthew Chase Chambers, Joshua Charkow, Eric Deutsch, Andrew W. Dowsey, Yasin El Abiead, Ralf Gabriels, Helge Hecht, Steffen Heuckeroth, Joshua A. Klein, Michael Knierman, Lennart Martens, Robert L. Moritz, Laura-Isobel McCall, Steffen Neumann, Yasset Perez-Riverol, Hannes L. Röst, Elliott J. Price, Jim Shofstahl, David L. Tabb, Julian Uszkoreit, Juan Antonio Vizcaíno, Mingxun Wang, Sander Willems, Dirk Winkelhardt, Oliver Kohlbacher, Samuel P. Wein

Scalability of mass spectrometry-based metabolomics for natural extracts libraries exploration : current status, challenges, and opportunities

Source
Natural product reports : a journal of current developments in bio-organic chemistry - ISSN 1460-4752- (2025) p. 1-24
Author(s)
    Adriano Rutz, Wout Bittremieux, Robin Schmid, Olivier Cailloux, Justin J.J. van der Hooft, Mehdi A. Beniddir

A 2025 perspective on the role of machine learning for biomarker discovery in clinical proteomics

Source
Expert review of proteomics - ISSN 1478-9450- (2025) p. 1-12

A universal language for finding mass spectrometry data patterns

Source
Nature methods - ISSN 1548-7091-22:6 (2025) p. 1247-1254
Author(s)
    Tito Damiani, Alan K. Jarmusch, Allegra T. Aron, Daniel Petras, Vanessa V. Phelan, Haoqi Nina Zhao, Wout Bittremieux, Deepa D. Acharya, Mohammed M.A. Ahmed, Anelize Bauermeister, Matthew J. Bertin, Paul D. Boudreau, Ricardo M. Borges, Benjamin P. Bowen, Christopher J. Brown, Fernanda O. Chagas, Kenneth D. Clevenger, Mario S.P. Correia, William J. Crandall, Max Crüsemann, Eoin Fahy, Oliver Fiehn, Neha Garg, William H. Gerwick, Jeffrey R. Gilbert, Daniel Globisch, Paulo Wender P. Gomes, Steffen Heuckeroth, C. Andrew James, Scott A. Jarmusch, Sarvar A. Kakhkhorov, Kyo Bin Kang, Nikolas Kessler, Roland D. Kersten, Hyunwoo Kim, Riley D. Kirk, Oliver Kohlbacher, Eftychia E. Kontou, Ken Liu, Itzel Lizama-Chamu, Gordon T. Luu, Tal Luzzatto Knaan, Helena Mannochio-Russo, Michael T. Marty, Yuki Matsuzawa, Andrew C. McAvoy, Laura-Isobel McCall, Osama G. Mohamed, Omri Nahor, Mingxun Wang